$fast = 100;
$case_a = TRUE;

// Figure 5a Kauffmann
$KMn=1;
$KMn_p=0;
$KMn_MC=1;
$KMn_pMC=1;
$KMn_D=0;
$KMn_pD=0;
$KMn_MCD=1;
$KMn_pMCD=1;

$tp53u=2;
$tp53d=2;
$tp53hu=1;
$tp53hd=1;

$tMCu=0.6;
$tMCd=1;

$tMNu=0.3;
$tMNd=1;

$tDd=5;

Dam.istate = TRUE;
Mdm2N.istate = TRUE ;
p53.istate = FALSE;
p53_h.istate = FALSE;
//sample_count = 1000;
sample_count = 50000;
// max_time = 40;
max_time = 50;
time_tick = 0.1;
//time_tick = 5;
discrete_time = 0;
use_physrandgen = FALSE;
seed_pseudorandom = 100;
//display_traj = TRUE;

//Mdm2C.is_internal = TRUE;
//Mdm2N.is_internal = TRUE;
//Dam.is_internal = TRUE;
//p53.is_internal = TRUE;

//Mdm2C.refstate = 0;
p53.refstate = 0;
p53_h.refstate = 0;
//Mdm2N.refstate = 0;
thread_count = 1;

statdist_traj_count = 100;
statdist_cluster_threshold = 0.9;