$rate_RNA = 1;
$rate_protein = 10;
$noise = 0.01;

//wg1.is_internal = TRUE; 
//1
//en1.is_internal = TRUE;  
//4
//hh1.is_internal = TRUE; 
//HH1.is_internal = TRUE; 
//6
//ptc1.is_internal = TRUE;
//7
//PTC1.is_internal = TRUE;
//8
//ci1.is_internal = TRUE; 
//9
//CI1.is_internal = TRUE;  
//10
//CIA1.is_internal = TRUE; 
//11
//CIR1.is_internal = TRUE; 
//12
//
// segment 2
//wg2.is_internal = TRUE; 
//14
//en2.is_internal = TRUE;  
//16
//hh2.is_internal = TRUE;  
//HH2.is_internal = TRUE;  
//17
//ptc2.is_internal = TRUE; 
//19
//PTC2.is_internal = TRUE;
//20
//ci2.is_internal = TRUE;  
//21
//CI2.is_internal = TRUE;  
//22
//CIA2.is_internal = TRUE; 
//23
//CIR2.is_internal = TRUE; 
//24
//
// segment 3
//wg3.is_internal = TRUE;  
//26
//en3.is_internal = TRUE;  
//28
//hh3.is_internal = TRUE;
//HH3.is_internal = TRUE;
//30
//ptc3.is_internal = TRUE; 
//31
//PTC3.is_internal = TRUE; 
//32
//ci3.is_internal = TRUE;  
//33
//CI3.is_internal = TRUE;  
//34
//CIA3.is_internal = TRUE; 
//35
//CIR3.is_internal = TRUE; 
//36
//
// segment 4
//wg4.is_internal = TRUE;  
//38
//en4.is_internal = TRUE;  
//40
//hh4.is_internal = TRUE;
//HH4.is_internal = TRUE;
//42
//ptc4.is_internal = TRUE; 
//43
//PTC4.is_internal = TRUE; 
//44
//ci4.is_internal = TRUE; 
//45
//CI4.is_internal = TRUE;  
//46
//CIA4.is_internal = TRUE; 
//47
//CIR4.is_internal = TRUE; 
//
SLP1.istate=0;
SLP2.istate=0;
SLP3.istate=1;
SLP4.istate=1;

wg1.istate=0; 
WG1.istate=0;
en1.istate=1;
EN1.istate=0;
hh1.istate=1;
HH1.istate=0;
ptc1.istate=0;
PTC1.istate=0;
ci1.istate=0;
CI1.istate=0;
CIA1.istate=0;
CIR1.istate=0;

wg2.istate=0;  
WG2.istate=0;
en2.istate=0;
EN2.istate=0;
hh2.istate=0;
HH2.istate=0;
ptc2.istate=1;
PTC2.istate=0;
ci2.istate=1;
CI2.istate=0;
CIA2.istate=0;
CIR2.istate=0;

wg3.istate=0;  
WG3.istate=0;
en3.istate=0;
EN3.istate=0;
hh3.istate=0;
HH3.istate=0;
ptc3.istate=1;
PTC3.istate=0;
ci3.istate=1;
CI3.istate=0;
CIA3.istate=0;
CIR3.istate=0;

wg4.istate=1;  
WG4.istate=0;
en4.istate=0;
EN4.istate=0;
hh4.istate=0;
HH4.istate=0;
ptc4.istate=1;
PTC4.istate=0;
ci4.istate=1;
CI4.istate=0;
CIA4.istate=0;
CIR4.istate=0;

wg1.refstate=FALSE; 
WG1.refstate=FALSE;
en1.refstate=TRUE;
EN1.refstate=TRUE;
hh1.refstate=TRUE;
HH1.refstate=TRUE;
ptc1.refstate=FALSE;
PTC1.refstate=FALSE;
ci1.refstate=FALSE;
CI1.refstate=FALSE;
CIA1.refstate=FALSE;
CIR1.refstate=FALSE;

wg2.refstate=FALSE;  
WG2.refstate=FALSE;
en2.refstate=FALSE;
EN2.refstate=FALSE;
hh2.refstate=FALSE;
HH2.refstate=FALSE;
ptc2.refstate=TRUE;
PTC2.refstate=TRUE;
ci2.refstate=TRUE;
CI2.refstate=TRUE;
CIA2.refstate=TRUE;
CIR2.refstate=FALSE;

wg3.refstate=FALSE;  
WG3.refstate=FALSE;
en3.refstate=FALSE;
EN3.refstate=FALSE;
hh3.refstate=FALSE;
HH3.refstate=FALSE;
ptc3.refstate=FALSE;
PTC3.refstate=TRUE;
ci3.refstate=TRUE;
CI3.refstate=TRUE;
CIA3.refstate=FALSE;
CIR3.refstate=TRUE;

wg4.refstate=TRUE;  
WG4.refstate=TRUE;
en4.refstate=FALSE;
EN4.refstate=FALSE;
hh4.refstate=FALSE;
HH4.refstate=FALSE;
ptc4.refstate=TRUE;
PTC4.refstate=TRUE;
ci4.refstate=TRUE;
CI4.refstate=TRUE;
CIA4.refstate=TRUE;
CIR4.refstate=FALSE;

discrete_time = 0;
use_physrandgen = FALSE;
seed_pseudorandom = 100;

sample_count = 10;
max_time = 10000;
time_tick = 0.2;

thread_count = 4;

statdist_traj_count = 10;
statdist_cluster_threshold = 0.0;