TNF.istate = TRUE;
ATP.istate = TRUE;
FADD.istate = TRUE;
cIAP.istate = TRUE;

FASL.istate = FALSE ;
TNFR.istate = FALSE ;
DISC_TNF.istate = FALSE ;
DISC_FAS.istate = FALSE ;
RIP1.istate = FALSE ;
RIP1ub.istate = FALSE ;
RIP1K.istate = FALSE ;
IKK.istate = FALSE ;
NFkB.istate = FALSE ;
CASP8.istate = FALSE ;
BAX.istate = FALSE ;
BCL2.istate = FALSE ;
ROS.istate = FALSE ;
MPT.istate = FALSE ;
MOMP.istate = FALSE ;
SMAC.istate = FALSE ;
Cyt_c.istate = FALSE ;
XIAP.istate = FALSE ;
apoptosome.istate = FALSE ;
CASP3.istate = FALSE ;
cFLIP.istate = FALSE ;
NonACD.istate = FALSE ;
Apoptosis.istate = FALSE ;
Survival.istate = FALSE ;

$FADD_del = FALSE ;
$RIP1_del = FALSE ;
$NFkB_del = FALSE ;
$NFkB_oe = FALSE ;
$CASP8_del = FALSE ;
$BAX_del = FALSE ;
$BCL2_oe = FALSE ;
$cIAP_del = FALSE ;
$XIAP_del = TRUE ;
$APAF_del = FALSE ;
$cFLIP_del = FALSE ;
$TransRate = 0.1;


TNF.is_internal = TRUE ;
ATP.is_internal = TRUE ;
FADD.is_internal = TRUE ;
cIAP.is_internal = TRUE ;

FASL.is_internal = TRUE ;
TNFR.is_internal = TRUE ;
DISC_TNF.is_internal = TRUE ;
DISC_FAS.is_internal = TRUE ;
RIP1.is_internal = TRUE ;
RIP1ub.is_internal = TRUE ;
RIP1K.is_internal = TRUE ;
IKK.is_internal = TRUE ;
NFkB.is_internal = TRUE ;
CASP8.is_internal = TRUE ;
BAX.is_internal = TRUE ;
BCL2.is_internal = TRUE ;
ROS.is_internal = TRUE ;
MPT.is_internal = TRUE ;
MOMP.is_internal = TRUE ;
SMAC.is_internal = TRUE ;
Cyt_c.is_internal = TRUE ;
XIAP.is_internal = TRUE ;
apoptosome.is_internal = TRUE ;
CASP3.is_internal = TRUE ;
cFLIP.is_internal = TRUE ;


sample_count = 80000;
max_time = 100;
time_tick = 0.1;
discrete_time = 0;
use_physrandgen = FALSE;
seed_pseudorandom = 300;
display_traj = FALSE;


thread_count = 4;

statdist_traj_count = 100;
statdist_cluster_threshold = 0.8;