//ATP.istate = TRUE;
//FADD.istate = TRUE;
//cIAP.istate = TRUE;

FASL.istate = FALSE ;
TNFR.istate = FALSE ;
DISC_TNF.istate = FALSE ;
DISC_FAS.istate = FALSE ;
RIP1.istate = FALSE ;
RIP1ub.istate = FALSE ;
RIP1K.istate = FALSE ;
IKK.istate = FALSE ;
NFkB.istate = FALSE ;
CASP8.istate = FALSE ;
BAX.istate = FALSE ;
BCL2.istate = FALSE ;
ROS.istate = FALSE ;
MPT.istate = FALSE ;
MOMP.istate = FALSE ;
SMAC.istate = FALSE ;
Cyt_c.istate = FALSE ;
XIAP.istate = FALSE ;
apoptosome.istate = FALSE ;
CASP3.istate = FALSE ;
cFLIP.istate = FALSE ;
NonACD.istate = FALSE ;
Apoptosis.istate = FALSE ;
Survival.istate = FALSE ;
Division.istate = FALSE ;
Death.istate = FALSE ;



$ProdTNF_NFkB = 1;
$TransRate = 1/24;
$DivRate = 1/24;
$Degr_TNF = 1/6;
$TNF_induc = 0;

[TNF].istate = 1 [1] , 0 [0];


//TNF.is_internal = TRUE ;
//ATP.is_internal = TRUE ;
//FADD.is_internal = TRUE ;
//cIAP.is_internal = TRUE ;
//
//FASL.is_internal = TRUE ;
//TNFR.is_internal = TRUE ;
//DISC_TNF.is_internal = TRUE ;
//DISC_FAS.is_internal = TRUE ;
//RIP1.is_internal = TRUE ;
//RIP1ub.is_internal = TRUE ;
//RIP1K.is_internal = TRUE ;
//IKK.is_internal = TRUE ;
//NFkB.is_internal = TRUE ;
//CASP8.is_internal = TRUE ;
//BAX.is_internal = TRUE ;
//BCL2.is_internal = TRUE ;
//ROS.is_internal = TRUE ;
//MPT.is_internal = TRUE ;
//MOMP.is_internal = TRUE ;
//SMAC.is_internal = TRUE ;
//Cyt_c.is_internal = TRUE ;
//XIAP.is_internal = TRUE ;
//apoptosome.is_internal = TRUE ;
//CASP3.is_internal = TRUE ;
//cFLIP.is_internal = TRUE ;


sample_count = 100000;
max_time = 1;
time_tick = .1;
discrete_time = 0;
use_physrandgen = FALSE;
seed_pseudorandom = 10;
display_traj = FALSE;

thread_count = 8;

statdist_traj_count = 1;
statdist_cluster_threshold = 0.8;